Orion, the t-case does have a gear selection for 2wd, doesn't it? If so, then you wouldn't need to swap the Trooper axle components unless you just did not want the manual hubs, correct? If you were to swap in the axle components instead of selectable hubs then you would still be turning the CV shafts, causing wear on the boots, and re-creating that bit of parasistic drag, even when in 2wd. With disengaged hubs though, (assuming the t-case does have a 2wd option) nothing would be turning in regards to the front drive components. I am assuming the axle disconnect in the Trooper is vaccuum-actuated like on some GM models. Select 2wd by lever or button and the t-case disconnects the front driveline from the gears, and the front axle disconnect device is actuated at the same time. In any case, I don't think that actuator would have any effect on the TOD, if it did, couldn't you just run another wire to trick the computer into thinking it was engaged?
Sent from my "two hands on a keyboard"