Over all it hasn't been that difficult. Some parts are time consuming like mating the cases together. I figure I will have spent around 40 +- hours doing the swap. A possible compromise would be to just have a shop pull out the auto and install the manual. From there it is fairly straight forward. Shouldn't be any R&D required once I finish the documentation. No fabrication or welding needed, I did have to drill 1 hole in a dust cover but that is it. I was concerned the Trooper shifter would be too tall but as it turns out fits perfect.
I will document the wiring needed to finish off the build here soon. Been under the weather the past couple days.