I dont have my sub mounted in the rear hatch yet, but have done a few preparatory things to be ready when I do. In some parts of the rear hatch, I Dynamatted. Not too many places you can access easily in there and its pretty contoured, so Dynamatting is a pretty good headache in there. For other areas, such as weld joints and hard to reach areas for Dynamat, you can use a good spray insulation. I didnt imagine myself ever wanted to toy with much in there after I had the sub enclosure in, so I just spray insulated everything, even over top of the Dynamat. Watch you dont spray your lock mechanism though, heh. That wouldnt be a very intelligent thing to do. Other than that, packing the area with some polyfill before closing it up with reduce sound waves in the space and aid in keeping down any vibration through the hatch to the body of the vehicle.
I have heard Navigators hatch system and its quite nice. Not as beefy as my 12" bandpass system, but it does look better than mine.
*elbows Nav in the ribs*
Gary Noonan
'01 S/C VX / '18 Forester XT